Alumni


Post-doctoral Fellows

Alireza Ghanbarpour

Assistant Professor, Washington University at St. Louis


Alireza did his Ph.D. in the chemistry department at Michigan State University before a short post-doc at Yale University in the department of Cell Biology. He was in the Davis lab as a joint postdoc between the Davis and Sauer labs, working to delineate the detailed mechanism of substrate processing by soluble and membrane AAA proteases using cryo-EM, mass spectrometry, and biochemistry.

Andrew Grassetti

Protein Scientist, Aero Therapeutics

As a graduate student in Scott Gerber’s lab at Dartmouth College, Andrew developed and applied proteomics techniques in order to better understand the mammalian cell cycle. In the Davis lab, he investigated the role of protein phosphorylation in autophagy, both mechanistically, using biochemical and structural methods, and at a systems level, through the use of mass spectrometry based phosphoproteomics.

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Osvaldo Cruz-Rodriquez

Senior Scientist, “Stealth Startup”


Osvaldo trained in the labs of Jorge Iñiguez-Lluhí, Roger Sunahara, and John Tessmer at the University of Michigan before joining the Davis lab. Using biochemical and structural approaches, Osvaldo worked to understand how cells initiate autophagy and build the protein and lipid structures required to form autophagosomes. He’s also a fantastic mentor – seen here working with a first-year rotation student.

Danica Cui

Danica obtained her PhD in chemistry from Yale University. As a graduate student in Pat Loria’s Lab, Danica employed biophysical tools such as NMR spectroscopy and X-ray crystallography to study the structure-function relationship of PTP1B, an important regulator of insulin signaling. In the Davis lab, Danica investigated the roles of selective autophagy cargo receptors in autophagy biogenesis and autophagy degradation pathways using structural approaches, biochemistry and SILAC-based mass spectrometry methods.  Danica was the recipient of the Life Sciences Research Postdoctoral Fellowship.

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Graduate Students

Ellen Zhong

Assistant Professor, Princeton University

Ellen worked at D.E. Shaw Research before coming to MIT to learn some experimental biology. In the Davis lab, she developed computational methods to determine structures of highly heterogeneous assembly intermediates by single particle cryo-electron microscopy. Ellen was a recipient of the NSF Graduate Research Fellowship.

Laurel Kinman

SANDLER Independent fellow, UCSF

Laurel did her undergraduate research at Wellesley in Louise Darling’s lab. In the Davis lab, she studied assembly of the autophagy initiation complex in yeast using pulse-labeling mass spec and cryo-EM, and developed computational methods to analyze ensembles of highly heterogeneous cryo-EM structures. Laurel was a recipient of the Hugh Hampton Young Graduate Fellowship.

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Barrett Powell

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Barrett completed his undergraduate training at Swarthmore College in Liliya Yatsunyk’s lab. In the Davis lab, Barrett worked to develop new software tools to analyze single particle cryoEM datasets, including extensions to cryoDRGN, and had an interest in tomographic approaches (both experimental and computational) to understand protein complexes involved in autophagy.

Sam Webster

Sam completed her undergraduate training at CU Boulder in Rob Batey’s group. In the Davis lab, Sam applied structural approaches to understand bacterial ribosome assembly. Sam was a recipient of the NSF Graduate Research Fellowship.

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Other Alumni

Master’s Students

  • [2019] Daniel Ramirez Montero. Daniel recently completed his Ph.D. in Physics at TU Delft in the Netherlands. You can read more about Daniel’s work in the Davis lab here.

UROP students

  • [2018] Matthew Ellison – continued his training as a Ph.D. student at Dartmouth (Mathematics)
  • [2021] Albert Liu– continued his training as a Ph.D. student at UPenn (Biological Engineering)
  • [2021] Shirley Li – Recently completed studies at MIT.

Summer Undergraduate Students

  • [2020] Virgina (Katie) Blackwell – currently a Ph.D. student at MIT (Biology)
  • [2021] Sybrina Kerr – currently at Ph.D. student at Baylor College of Medicine (Biology)
  • [2022] Rita Anoh – currently at Ph.D. student at MIT (Biology)
  • [2022] Ellen Irving – Ph.D. student at MIT (Biology).
  • [2023] Fareeda Abu-Juam – currently at Ph.D. student at Carnegie Mellon (Computational Biology)

Support Staff

  • [2018-2024] Gina Lee – currently in an administrative support role for the State of MA